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the way your brain works changes as you go from one state to another, right?

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From being totally zoned out, right?

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You know, the undergraduate in the back of the large lecture hall,

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maybe doing the head bob thing, right?

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Between like that state versus being really super focused and,

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and like paying close attention to something that's really important, right?

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You can feel that your brain is operating differently in different states.

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So we spent a long time looking at that.

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And then we thought, you know, we're missing half the signals

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or more in the brain.

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The human brain is the most complex structure in the known universe.

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And we are in the middle of a scientific revolution to understand its inner workings.

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Join us for a conversation with world renowned neuroscientists

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as they visit Rochester.

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I am Dr. John Foxe, director of the Del Monte Institute for Neuroscience

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at the University of Rochester.

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And you are listening to Neuroscience Perspectives.

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Hi, I'm John Fox, director of the Del Monte Institute for Neuroscience

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at the University of Rochester.

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And I'd like to welcome you to another episode of Neuroscience Perspectives.

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Today, I have a fantastic guest with us, Dr. Jessica Cardin,

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who's an associate professor of neuroscience at Yale University School of Medicine.

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Jess, welcome to Neuroscience Perspectives.

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Thank you so much for having me.

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Well, we really appreciate you being here.

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So you really, you know, you're sort of pioneer of studying circuit dynamics.

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And kind of a scavenger of techniques to get at that, which is just fantastic.

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I really like that, yes.

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Just, you know, if there's a technique out there that can help you get after something,

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that's sort of just looking at the work that you've been doing.

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It's like you're going to get it and make it make it work for you.

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And I think that's really admirable.

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But yeah, what gets you up in the morning?

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What are you excited about at the moment?

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Oh, my gosh, we have diversified so much in the last few years.

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The real truth is that I get bored after four or five years of doing any one thing.

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So every few years, I think it's partly that I get a little restless and we do something new,

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or someone new comes to the lab and has a different set of ideas.

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And then we go off in a completely different direction than I was anticipating.

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So sometimes that takes us in directions that I would not have predicted.

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But right now, you know, we had this long series of experiments where we were really trying

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to deeply understand, you know, how the way your brain works changes as you go from one state

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to another, right, from being totally zoned out, right, you know, the undergraduate in the back

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of the large lecture hall, maybe doing the head bob thing, right, between like that,

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versus being really super focused and, and like paying close attention to something that's

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really important, right, you can feel that your brain is operating differently in different

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states.

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So we spent a long time looking at that.

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And then we thought, you know, we're missing half the signals or more in the brain.

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There are all we're only looking at neurons, the firing of neurons, we're like, we're not

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looking at any of the other relevant signals.

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And so we tell our audience what those other signals are that right.

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So, you know, so there are all of these neurotransmitters floating around, right?

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Sometimes, you know, in the shorthand for this is neuroscientists, sometimes that your

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brain is sort of swimming in a soup of neurotransmitters and other chemicals that are that are, you

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know, floating around and being released all the time.

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And some of them are pretty familiar, I think, to most people, things like acetylcholine

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or especially norepinephrine, right, those are things that you hear about often.

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And they're, they're frequently targets of, you know, therapeutic drugs for psychiatric

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conditions, you know, because we know that when they're released, they modify brain activity.

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Right.

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And, and we know that they're associated with things like changes in your mood or changes

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in your attention levels.

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Right.

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And so we thought, ah, we are missing all of these signals.

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And so now we've developed a whole series of approaches in the lab where we can look

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at the neurons, right, the brain cells, and we also can see all those other signals at

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the same time.

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Right, right.

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All right.

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And then, you know, in parallel to that, we also started thinking about, well, wait, there

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are other cell types, like we're only looking at one cell type, you know, maybe we should

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be looking at these other cell types that are in the brain that do all these other functions,

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you know, that may be related to some of these changes in brain function over time.

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And so that took us to looking at these other cell types that are in the brain that do all

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these other functions over time.

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And so we started looking at non-neuronal cells.

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Right.

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So we just now, for the first time, have projects starting up looking at non-neuronal cells,

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which is super exciting, right, because, you know, it's a, it's a whole side of, of the

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brain that, you know, I've never really thought about.

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Yeah.

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Right.

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And all to the end of sort of decision-making processes or motivated behavior.

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Yeah.

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Yeah, exactly.

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Yeah.

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It's, it's an interesting thing.

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You're getting all of these signals.

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So, so maybe a philosophical question and, and, you know, I think a lot of people in

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the sciences quite would laugh at this, like, you know, if we, if we get a bit, if we, if

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we could measure every single neuron in the brain and every neurotransmitter system and

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arousal system and all the rest of it, and we were able to gather all that information,

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would we, would we get to new understanding?

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Is it, is it, or would we have recreated the monster?

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Right.

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Yeah.

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I mean, do you need something even more complex than the brain in order to be able to understand

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the full workings of the brain?

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Right.

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This is the thing that keeps teenagers up at night, you know, like staring at the ceiling

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and stuff.

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Like, how does my brain work?

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We have, we have sort of parallel problems.

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Right.

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And this is, this was the start of the Brain Initiative actually with the NIH.

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Right.

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This is the, the Brain Initiative, which has funded an enormous amount of spectacular technology

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development and new ways of accessing brain circuits.

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Right.

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Started because of this idea that if you could just measure everything, you can measure all

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the neurons, right, you would really understand the system.

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And that has given rise, I think, to this enormous upswing in big data in neuroscience,

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right?

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Get in there and record everything.

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Right.

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Yeah.

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And then you, so, so we have this one problem, which is like, how do you do that?

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Right.

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So we need new technical approaches and that's been really productive.

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Right.

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We have all kinds of new approaches for this.

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You know, you can, you can record all kinds of things, but you have a parallel problem,

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which is what, what do we do with this enormous pile of data?

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Right.

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And how do you turn it into human understanding?

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Yeah.

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Something that we can.

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Biological interpretability.

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Right.

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Like how do we, how do we distill this into something that I can actually tell you that

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gives you intuition about how the brain works?

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Right.

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Exactly.

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Yeah.

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And that's a much bigger problem as it turns out.

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And, you know, people are solving that in different ways.

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And I think, you know, we've spent some time in our own group and in collaboration with

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Mike Higley's lab, with whom we share a lot of projects and equipment and stuff, developing

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new analytical techniques, new math, basically, like playing around with some math.

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But also now we've kind of branched out into machine learning approaches and other, other

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model based approaches that can help us take this incredibly complex series of signals

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and try to distill it down into what are the important bits?

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That, you know, this, I'm really interested in this idea of taking what is very, very

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complex material data, doing some dimensionality reduction on it to turn it into something

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that a human being can actually wrap their mind around.

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But then the next step, of course, is one thing to have your training and to be able

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to understand these concepts because of your training.

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Right.

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But then to communicate that to the public who pay the bills.

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Yeah.

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Does that keep you up at night too?

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Or do you worry about that?

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I asked you in the context of a time, like a time, geopolitical time where the public

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trust in science, which used to be extraordinary, you know, 95 percent of people in the early

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naughties, you know, just thought, you know, had profound trust in science.

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And, you know, we come to a pandemic and we've lost our audience a little bit.

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You know, there's a, people have sown a lot of doubt and so on.

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Yeah.

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And I think my perception of some of what's gone wrong, I think, is in how we all think

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and communicate about what the scale of the problem and the unknowns is.

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You know, we've been, you know, as a field, right, neuroscience in the sense of putting

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a lecture in someone's brain has existed since maybe the 1920s, let's say, right, where the

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first recordings were made of patients, right, you know, showing changes in brain activity

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with changes in cognitive function, right.

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So you ask patients to do a task, a math problem, and see a change in brain activity, right.

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That's dates to the 1920s.

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So basically it's been about a hundred years, right.

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And you would think that in a hundred years we might have solved everything.

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But the truth is that it's so complex, right.

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I mean, it is fascinating and complex and it's an enormous problem, right.

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Like, we just don't, we don't have all the answers, right.

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And I think it's a mistake to suggest that we are so competent, so good.

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We're just so smart that we're going to solve the brain now, right.

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We're probably going to be working on this for hundreds of years, right.

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We, you know, I would give it another century, right.

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You know, it's an enormous challenge, right.

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So I think some of our, some of it's our fault for not communicating what the hell we're

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doing, right.

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You know, and, and then some of it is also this, this idea that, you know, we should

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be only focusing on disease, right.

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Because I, in my mind, I think the basic research that how does the thing work should go hand

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in hand with how do I fix it when it's broken?

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You just anticipated two of my questions.

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One of them, because I really wanted to, I wanted to pivot to that because I think that's

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a super important point, which is, you know, just studying something for the sake of the

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knowledge of how it works and not having to have the filter of utility in a disease or

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something down the road.

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But you do think about disease in your work and, and we do.

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Yeah.

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We used to work primarily on neurodevelopmental disorders, right.

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So autism, schizophrenia, and in my lab, because most of what we do is fairly reductionist,

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right.

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And then they're in the circuits and manipulating things.

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It's mostly animal models of genetic diseases, right.

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So specific genetic mutations that are known to be associated with a disease.

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And in our goal is really to try to understand what are the consequences of that genetic

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mutation, right.

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And not necessarily at the level of expression of a, of a gene, but rather it's more holistic

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consequences for how does that change the way the brain works.

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Right.

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And then in recent years, we sort of kind of fell a little bit into the other end of

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things, if you will.

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So aging and neurodegeneration.

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And there we were looking at several models of Alzheimer's disease.

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And in part, because the same sort of thing I said earlier, you know, we, we kind of fell

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into a couple of interesting ideas and then realized that there were interesting questions

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that we hadn't answered yet.

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And you know, we started doing these longitudinal studies where we're imaging individual animals

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as they age, you know, which is really fascinating.

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It generates an enormous amount of data, which we're so grappling with.

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But you know, there are multiple ways to look at the disease models, right.

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One of them is that they're a tool, right.

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So it is a targeted way of breaking the system, right.

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And then by perturbing it, you understand a little bit better how it worked when it

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was working.

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Right.

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And another way to look at the disease model work is that these are all very complicated

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disorders, right.

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And they, they don't have autism is a great example.

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They're like a thousand autism related genes, right.

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And they do wildly different cell biological things.

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And we at a fundamental level do not understand how genetic perturbation of genes that do

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completely different things at the level of a single cell could give rise to something

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that we perceive as being a common end point.

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We perceive all of those consequences as having something in common.

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It's all under the umbrella of autism spectrum disorder.

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Right.

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So that, that lack of understanding really highlights our lack of knowledge about the

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basics of how the brain really works.

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And this kind of idea too with diseases, like you mentioned, autism and schizophrenia, we're

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quite a lot of those genes.

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The two diseases have in common, not all of them.

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Yeah, absolutely.

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And yet, you know, perturbations in the genetics will send one person on a trajectory that

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ends up with an autism phenotype, which is really very distinct from schizophrenia phenotype.

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And so yeah, we've a lot to learn.

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We have a lot to learn.

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Yeah.

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There is just an enormous amount of unknown there, right.

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And that's kind of why I feel like we do a bad job of communicating the scale of the

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challenge.

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Right.

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You know, it's a...

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You said there as well, I, you know, we'll probably be doing it for another hundred years.

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I don't, I don't doubt that that's true.

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And a question that was in my mind is like, you know, you're in the lab like myself, you

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know, and you're thinking about next year and the year after and that, but if you were

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to project that 10 years, like where do you, where do you see us in 10 years?

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Is it an impossible question?

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It is.

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So my part of the field, my little chunk of the field, right, is racing towards a much

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more model-based, high throughput, high dimensional data set kind of approach.

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Right.

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So we are kind of converging on multimodal data with lots of different signals and needing

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those, those more model-based approaches to help us make sense of things.

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But so we're sort of, I think a lot of the field is moving towards the more holistic

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view of how things are working, how many different signals or parts of the brain are interacting

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at the same time.

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And I, I'm, and you mentioned machine learning has a big component of this because you start

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to take these extraordinary quantities of data that are from different systems, you

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know, on different timescales and try to put them into one matrix and get some, derive

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some understanding.

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And this is the part where it's difficult for a human brain to grapple with all that.

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So yeah, I mean, and so I see a lot of that coming, you know, I think there's going to

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be more and more of that, which is, you know, great because it gives us that more holistic

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understanding comes with some caveats.

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Like you still need to go back again and get that biological interpretability at the other

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side.

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So, so big role for, for the AI revolution that we're really in the, in the middle of,

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you think in helping to understand this or?

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It's a great set of tools in combination with all the other tools.

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I, I am, I'm a biologist at heart.

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In fact, I'm actually a sort of old school, you know, crusty old electrophysiologist at

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heart.

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So in, so really, truly I want to see ground truth data at the end of the day.

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So for me, it has to come full circle, right?

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I love, I love all these tools, but at the end of the day, I want to be able to say I

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gained a mechanistic level of insight into how the circuits in the brain are working.

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So tell me when you, when did you catch the science bug?

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Like, was that, was that baked in early?

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It actually was.

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I was very fortunate to have, you know, parents who love to, you know, follow their kids'

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passions, you know, and explore things and are really supportive.

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And so, you know, I got interested in looking at things in pond water and my parents, you

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know, took us out to the local pond and we had water samples and, you know, put hay in

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some of them and not in others and looked to see what creatures developed and, you know,

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had a little microscope and, you know, so you're an experimentist from the, you know,

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but, but with a lot of encouragement, you know, to, to keep exploring, you know, and

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that was your parents where you had major influence.

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Where did you grow up?

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A little bit of everywhere actually.

293
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Yeah.

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Originally from Poughkeepsie, New York.

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So I'm fond of Upstate, but we moved every few years for a while because my dad worked

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for IBM actually.

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And so I've lived in Poughkeepsie and I've lived in Dallas, Dallas in the late eighties,

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which was fabulous.

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And then in Boulder, Colorado.

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Very good.

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Dallas in the late eighties.

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Was the TV show still running with JR?

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Yeah.

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And, and, and no lie, it was all big hair and, and pickup trucks.

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So it was, it was an interesting transition.

306
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Fantastic.

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But, but you know, sort of fortuitous for me as well, because I landed in the end in

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a school there that had a very strong science program and encouraged all the kids to do

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science projects for the local science fairs.

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Right.

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And so, because it was an expectation, right?

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Like everybody did this.

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Right.

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You know, we got into doing science fair projects and, you know, and so I think it, it sort

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of carried that thread through a little bit, you know.

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Tell me about mentorship then, like along the, along the road, right.

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You pick up people and there are people who have a major impact on, on the trajectory.

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Is there one or two people that you'd point to specifically and times in your life where,

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where, you know, this really made a big impact on you?

320
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Yeah, absolutely.

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I mean, a lot of it came from, you know, the sort of early mentorship, you know, in college

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in, you know, not even, not even in a continuous sense, but in like key moments where, you

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know, people take you into their lab and give you a, you know, a spot in the lab and a project

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to work on, you know, and then encourage you to keep going.

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And for me, grad school was amazing, you know, because you end up with not just one mentor,

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but a whole team of people in the end that you interact with.

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And they may not all agree with each other in the end or have different mentoring strategies,

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but you can kind of pick and choose a little bit, you know, the things that work for you.

329
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Right, right.

330
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And through those experiences, have you, have you picked up a specific mentoring style yourself?

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Is there something that you bring or that you'd say this is, this is a key component?

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I think, you know, thus far in my experience, you know, so I've been at Yale for 14 years

333
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or so.

334
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Every student is different, right?

335
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You know, and I don't, I think if I have a mentoring style, it might be mostly centered

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around being very patient, you know, very, trying to be very, very tolerant of the differences

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between other people, how their styles might, might interact with others in the lab group

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or with me.

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You know, I, I try not to impose too many of my own, the expectations I had for myself,

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I try not to impose them on my students because their style and their, their learning style

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might be different from mine or their goals in life might be different from mine.

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So yeah, I love that answer in, I often get asked the same thing and I say like, you know,

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people in the lab are just human beings, like the human beings in your world, in your life,

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and they come in all shapes and sizes and you have to figure out a way to fit around

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that.

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Yeah, everybody has a real life too, you know, it isn't, it isn't science 100% of the time,

347
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although sometimes it is like, I have trouble turning off the science in my head.

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But you know, people come to the lab and they have had a bad day or they have, you know,

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a family crisis or, you know, or something else is more important that day than, you

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know, this one experiment.

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And you know, that's, that's a real thing.

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It's not just science, it's also everybody's real life too.

353
00:20:06,560 --> 00:20:08,000
Now we can't close this interview.

354
00:20:08,000 --> 00:20:12,640
We have a few more minutes, I think, without talking about your laundry room and the three

355
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blind mice and the nine mice, you have to tell that story.

356
00:20:17,400 --> 00:20:22,600
What went on there and how did that happen and how did your mother tolerate this?

357
00:20:22,600 --> 00:20:25,200
It was partly their idea, my parents right now.

358
00:20:25,200 --> 00:20:30,840
This is again back to high school science fairs, you know, and I had, we actually done

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some science fairs using pet guinea pigs in the years prior to this.

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So I had guinea pigs and we, we had done learning and memory experiments, you know, with like,

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and they learned to associate a cue with a food reward and that kind of thing.

362
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And so what age are you now?

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00:20:47,240 --> 00:20:51,560
This, so sort of in like eighth and ninth grade.

364
00:20:51,560 --> 00:20:59,200
So preteen, you know, pretty, you know, somewhere 12, 12 to 13.

365
00:20:59,200 --> 00:21:06,800
Yeah, young, you know, and, and I, I had wanted, you know, to do another science fair project

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like this.

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So my parents helped me find a researcher to local university.

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This was Southern Methodist, you know, in Dallas and a very kind researcher who gave

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me a set of mice, lab mice to work with, which we would never do now, right?

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00:21:23,320 --> 00:21:26,520
Like, you know, sending lab mice home to some kid's house.

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00:21:26,520 --> 00:21:32,120
So we took the mice home, had a group of males and a group of females, and I was interested

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in sex differences and learning and memory.

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And so we had a group of males and a group of females.

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We kept them in the laundry room for a while and I would run them on this T maze based

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task where there was a cue.

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And I also learned a bit about programming because this is the, we, we had to collect

377
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all the behavioral data and then do statistics on it and everything.

378
00:21:51,120 --> 00:21:58,160
So, and, and then even in Texas, it gets cold at night sometimes and the laundry room got

379
00:21:58,160 --> 00:22:01,000
very cold one night and we had a whole bunch of mice with hypothermia.

380
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And so my mom would tell you that she spent hours resuscitating hypothermic mice.

381
00:22:08,480 --> 00:22:10,120
Was the hairdryer involved?

382
00:22:10,120 --> 00:22:13,120
I think just towels.

383
00:22:13,120 --> 00:22:17,720
And you know, but in the end it was, it was actually a really cool data set.

384
00:22:17,720 --> 00:22:23,520
You know, we did great statistics and I learned all about Chi-square tests and like, you know,

385
00:22:23,520 --> 00:22:26,760
and we had this sort of longitudinal learning data for males and females.

386
00:22:26,760 --> 00:22:31,600
It turns out the males were better and better at learning the task.

387
00:22:31,600 --> 00:22:37,680
And you know, and it was, you know, you could look at that and say that has all the parts

388
00:22:37,680 --> 00:22:40,880
of a, the same thing that I do with my grad students now.

389
00:22:40,880 --> 00:22:44,960
Let me ask you one last thing before we, before we stop.

390
00:22:44,960 --> 00:22:49,200
You know, we, a lot of people who tune into neuroscience perspectives are youngsters and

391
00:22:49,200 --> 00:22:53,440
young grad students or, you know, college students thinking about getting into a career

392
00:22:53,440 --> 00:22:54,440
in science.

393
00:22:54,440 --> 00:22:59,880
Would you have, do you have some gems, surprise of wisdom, some guidance?

394
00:22:59,880 --> 00:23:00,960
I love my job.

395
00:23:00,960 --> 00:23:04,400
This is a, this is so much fun, right?

396
00:23:04,400 --> 00:23:11,760
It's, it's, it's a, it's a profession or a career for people who love to play, right?

397
00:23:11,760 --> 00:23:17,680
Love to think about ideas and be creative and play with the science.

398
00:23:17,680 --> 00:23:23,040
It has room for people who come from different backgrounds with different perspectives.

399
00:23:23,040 --> 00:23:27,720
There's plenty of room for that in science these days, which is wonderful.

400
00:23:27,720 --> 00:23:28,720
Right.

401
00:23:28,720 --> 00:23:34,720
And you know, and there are kind of endless opportunities right now.

402
00:23:34,720 --> 00:23:35,720
Right.

403
00:23:35,720 --> 00:23:43,800
I mean, there are an enormous number of opportunities to do basic science, translational science,

404
00:23:43,800 --> 00:23:44,800
right?

405
00:23:44,800 --> 00:23:45,800
All the different flavors, right?

406
00:23:45,800 --> 00:23:50,200
And you know, there are certainly these days more fellowships and summer opportunities

407
00:23:50,200 --> 00:23:56,200
and internships and postdoc spots and everything than there were 20 or 30 years ago, right?

408
00:23:56,200 --> 00:24:01,400
So I think I would view it as a, as an opportunity, you know, if I were a student right now.

409
00:24:01,400 --> 00:24:02,960
Well, that's, it's fantastic.

410
00:24:02,960 --> 00:24:06,640
It's completely clear from the time we got spent together that you love your job.

411
00:24:06,640 --> 00:24:08,880
And I think that's a great message to go out on.

412
00:24:08,880 --> 00:24:10,440
Jess, thanks so much for being here in Rochester.

413
00:24:10,440 --> 00:24:11,440
Thanks.

414
00:24:11,440 --> 00:24:12,440
It was really a pleasure.

415
00:24:12,440 --> 00:24:13,440
Great to see you.

416
00:24:13,440 --> 00:24:20,440
Thanks for having me.

