WEBVTT

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This is the Convergent Science Network podcast. Leading researchers in the domain

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of neuroscience, brain theory and technology are interviewed by Paul Verschure and Tony Prescott.

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This is Paul Verschure with the Convergent Science Network. I'm here with Peter Mombarts.

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And Peter is a neuroscientist who has been specialized in the development of

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the nervous system, the wiring of nervous systems.

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And Peter, you were telling us this morning that you chose the olfactory system

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of the mouse as your target system. So why is that?

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At heart, I'm a geneticist, molecular biologist. And when these auto-receptor

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genes were discovered in 1991,

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I felt that there was a great way of approaching the nervous system,

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particularly development, in a genetic and molecular way because that's what I'm at heart.

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And indeed, with time, we have learned that using these organ receptor genes,

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of which there are a very large number in the mouse, 1,200,

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we can differentially stain and manipulate populations of olfactory neurons,

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each expressing one of these receptors.

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And that's a very unique experimental advantage that the olfactory system of

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the mouse offers at this time. Right.

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So that was really a big discovery in the early 90s, right? That the idea that

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actually individual receptor neurons would be, if you want, tagged by single

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genes or would express single genes.

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Yes, the history of research in olfaction, in my view, can be divided in a pre-

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and post-1991 era, with the paper of Linda Bock and Richard Axel,

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published in April 1991.

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One, and it was the discovery of these auto-receptor genes that really made

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a proper experimental investigation of this system possible.

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At that time, it was not known that there would be only one gene expressed per neuron.

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It looked like that from the beginning, that a small number of genes would be

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expressed by a given cell, and more and more the evidence is consistent,

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perhaps asymptotically, with this one neuron, one gene rule.

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So that in some sense, now given that you were exposed to this discovery,

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you saw this as an opportunity to now have a specific preparation to understand

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how this system might wire itself.

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But why in particular an olfaction? You could also have gone for,

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let's say, any other system where you might have some genetic label to look at wiring.

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So what makes the olfactory system so appropriately sculpted for that?

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Well, not all decisions made by scientists are rational.

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There's also something called gut feeling. And back then I felt this was a wonderful new field.

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Also, it was new, right? It was a new approach.

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And I haven't regretted since then. There may be more interesting systems for

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other questions. But the questions I started to get interested in about 20 years

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ago are still the questions I'm

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interested in now that I think about every morning when I take a shower.

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And as long as that's the case, I think I will continue to work on it.

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So now, what's the – can you give – so this morning, you spent quite some time

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to sketch out for us the basic structure of this mouse olfactory system.

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So before we start looking at the details of your discoveries,

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what are the key elements of this olfactory system that we should keep in mind?

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So anatomically, a molecular, there is a division in different chemosensory

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structures in the nasal cavity, in the nose.

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You have the main olfactory epithelium, which contains several million olfactory sensory neurons.

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We don't really know the number, by the way, but it's several million,

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each expressing expressing one of these 1,200 auto-receptor genes that Bocanaxo described.

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Then you have the septal organ, a specialized structure, which contains approximately 10,000,

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olfactory neurons, and half of these express the same receptor called SR1,

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which is a rule breaker as these neurons are activated by a very wide variety of chemicals.

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We have the vomeronasal system, abbreviated VNO, vomeronasal organ,

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which doesn't express these auto-receptor

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genes, but two other families of G-protein-coupled receptor genes,

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V1R genes and V2R genes, V-vomeronasal, approximately 300 in total.

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And then finally, a very small chemosensory structure at the tip of the nose

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called the The Grüneberg ganglion, abbreviated GG, maybe 500,000 cells,

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that's perhaps mostly active in neonatal newborn mice.

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So there's already quite some complexity of chemosensory anatomical structures

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in the nose and the corresponding repertoires of chemosensory receptor genes.

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Not surprisingly, as mice are highly chemosensory organisms,

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they rely less on their sense of vision as we do, for instance.

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These neurons are all projecting one axon, one nerve ending,

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to the brain, to the main olfactory bulb or the accessory olfactory bulb.

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And in the bulb, each axon terminates only in one of the so-called glomeli,

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of which are about 3,600 in the mouse.

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So for the main olfactory system, which detects what we call garden-variety

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type of odorants, The picture is as follows. We have 1,200 genes.

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Most of these are expressed in olfactory neurons, but only one gene per cell, per neuron.

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Each neuron has one axon, and it enters one glomulus in the bulb,

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where it then synapses with second-order neurons.

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Okay. So now we have this structure, which is fairly layered.

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And so it seems to have it must have some tight control over how it is this

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is wired up and I think an added complexity of the system is that actually there's

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a continuous turnover of these receptor neurons so now the real problem becomes okay,

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this layer where it hits the olfactory bulb these nerve endings form then these

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glomeruli and how is the specificity of the organization of this glomeruli now assured.

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So during development, and quite quickly during development,

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I would say the first few days after birth, this glomerular array matures,

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finally forming these approximately 3,600 glomeruli, and the neurons that express

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the same receptor project their axons to the same glomeruli.

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In fact, they form these glomeruli. It's not that the glomeruli are there and

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they just have to project their accents to them.

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And this glomalor array, or glomalor map if you wish, develops quite reproducibly,

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left and right bollop in the same individual and from mouse to mouse.

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It's not so reproducible that it's stereotyped, we cannot draw a map with coordinates

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on the bollop and say this is this glomalus for this receptor,

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but it's very reproducible, or recognizable.

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What that means for the function of function for decoding is not clear,

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but there is clearly a spatial map that develops quite early,

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very precisely in the mouse.

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And also you then went to describe how this kind of labeling could occur.

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So there was this idea of zones, right? Maybe there are zones that sort of define

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a sort of a rough kind of chemotopic map in which you can then place your glomeruli. In the olfactory bulb.

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In the olfactory bulb, yes. Do you think that's still a plausible scheme?

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So there have been several attempts and several papers over the years in different

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model systems to ask with various electrophysiological or other methods,

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are there particular types of chemicals that certain regions of the bulb are

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more sensitive to than others?

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That's called chemotopy. entropy so there would be a chemical structure somehow

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to the glomerular array we don't know of course a priori what are the valid

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features that would be extracted is it chain length.

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Saturated unsaturated bonds molecular weight and so on we don't really know

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this in advance but have been attempts and there is some evidence that finds

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that and some other evidence that doesn't find it to some extent one can find

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what one wants to find right and no but wait But there's an important thing you said earlier.

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You said, okay, across individual mice, you find a rough chemotopic map.

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There's just some jitter with this glomerular, how it's placed in that, if you want, matrix.

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Yeah. But that would suggest that there is some sort of zoning,

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if you want, of this bulb in development.

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So the chemical logic of the glomerular array is not overwhelming.

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It's not the case that each part of the bulb is equally sensitive to all odorants,

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right? That would be the other extreme.

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Yes, there is some kind of regionalization, but it's not overwhelming and we

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don't really also know in the end what that means functionally,

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you know, if it's a byproduct of it doesn't make sense.

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No, let's do a thought experiment. I mean, if we take a mouse,

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we present it with lemon.

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Lemon, now we see some glomerulus light up in the olfactory bulb,

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and I ask you, go show, go find that same glomerulus now in another mouse.

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Then you would take the location of this identified glomerulus to start your search.

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What's the probability distribution around that point in space to find the glomerulus

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that will also respond to this lemon odor?

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There have been a few studies looking at that anatomically, and the level of

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uncertainty, if you wish, of variability is maybe in the order of 1.52%.

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So even between the left and the right ballop, that's probably a better way of looking at it.

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If you know the positions of glomeruli on the left ballop, you can't really,

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to the level that we would like to, find the positions of the glomeruli on the

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other ballop. We cannot make an atlas, in other words.

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Unlike, for instance, in the honeybee or the drosophila, where people have been

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able to make an atlas and say precisely this glomulus and this position with

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this shape, volume, and so on, that is that glomulus, and they give it a name.

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That we cannot do with the mouse or the rat thus far.

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But implicitly, I have the feeling you're saying that you believe that there's

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not a strong structuring.

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But in some sense, if we would try to do this more quantitatively and say,

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okay, if I have X, Y, Z of an identified glomerulus, now I need X,

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Y, Z plus some delta to find in another animal with probability 90%, let's say.

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Yeah, there's certainly a… How big is that delta? Yeah, there's certainly a probability.

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So I think the best way of visualizing this variability.

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Is to look at two glomeruli at the same time, for instance, of two strains of

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mice with a different marker, maybe one like Z, the other one GFP,

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cross them together, And then glomalus A and B would be on the left side, for instance,

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A more lateral than B, and on the right side, it may be the other way around.

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And this is more than whole distortions of the map.

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You could think perhaps that the bulb would be a little bit squeezed and things

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would be a little bit more anterior, posterior.

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Here, but if you have internal rearrangements, medial-lateral relative positioning

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that is inverted, then that clearly shows there is an underlying variability,

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which we have to acknowledge, unfortunately, to the point that we cannot make,

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even in inbred mice, a real atlas.

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And one actually may then also wonder if there is really a glomelon map.

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That word gets used a little bit loosely.

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Depends what kind of resolution and detail you want, but one can actually wonder,

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is Is that really a glomerular map for a species?

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But now if I would take my two mice again and we have our identified glomerulus,

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how big is the probability that I would find the matching glomerulus in another

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animal in exactly the opposite position? Yeah.

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Yeah, that I don't know. Maybe we have only emphasized the cases where there is a mismatch. Okay.

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But if you look more like the circle or the area, I would say about 20 or 30

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glomeruli for the two or three studies where this has been done.

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So 20 or 30 glomeruli out of 3,600 is quite small, actually,

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if you wish. That's what I'm saying.

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Yeah. So you could imagine that you have a rough patterning with a resolution of 10 to 20 glomeruli.

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And that's still, what, 10% of your total structure?

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1%. Oh, 1%, exactly 1%. And then within that, okay, you have some jitter.

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But this is actually pretty precise, I would say, as sort of a non-expert in this domain.

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Well, from a practical point of view, it's not precise enough for us to make

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some kind of an atlas, right?

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Which we thought a few years ago we could do. We could make a probabilistic atlas. Exactly right.

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But maybe we, in Drosophila again, although the number of glomeli and receptors is much lower,

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there you can there it's really been possible to do so yeah but the interesting

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thing is of course you apparently were expecting to find some precision in this

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atlas that was not satisfied no i i wasn't but but others were and they and

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they use terms even now still in print of,

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stereotyped which from the old french type i think the stereotype where you

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really make a photocopy right you have some kind of a template and you print

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an exact copy with maybe some little bit of dirt or so but it's basically an

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exact copy and that's not really the case and i wouldn't use that term either.

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What we like to say after thinking about this for quite a while,

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recognizable or reproducible, something like that.

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It's not stereotyped. You cannot even from the position of the glomalin,

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the left ballop predicts.

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With high degree of certainty, those in the right bulb. Okay.

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But then would you still go along with the idea that it's a rough patterning

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and then through some self-organizing process, this gets filled in and out of

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result of the self-organization of the variability?

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Or would you say at this stage, look, it's better not to commit ourselves too

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strongly to the idea of a map because it's too ambiguous at this stage?

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Yeah, and it can also be misleading to think in terms of mechanisms, right?

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If you really believe, I think some people still believe that this map is extremely

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precise and is in variable positions, then the mechanisms that enable to produce

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that must be extremely complicated, right?

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But if you acknowledge that there is indeed a bit of jitter or variability or

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uncertainty, then it relaxes a little bit the demands you would put on these mechanisms.

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So it's more than just being a little bit too strict or philosophical.

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We really want to know what kind of precision do we expect from the mechanisms

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that put that into place, which are largely unknown in my view today. Right.

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But now on top of that, it's not a case that we can think about this glomeruli

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as being really clean sphere type structures that are just neatly stacked together.

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You also have quite some variability in the shape of this glomeruli,

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so this cluster of nerve endings themselves.

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So what kind of variability do you see there? So yeah, glomalus is acellular.

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It doesn't have any cells in it, no nuclei.

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It's a few.

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Hundreds of incoming axons that terminally arborize and make synaptic contact

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with the dendrites of the second-order neurons.

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So this ball of synapses, that is a glomelus, which is a discrete structure

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surrounded by some glia and pyroglomelar neurons and so on.

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We would like them to be, of course, all perfect spheres, but that's indeed

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not the case. Some are a bit more oblongated.

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Some are in the form of a haltier with a central stalk and two balls hanging

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on it, which makes it a bit difficult sometimes to say is this one or two glomeruli.

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The average diameter would be about 55 micron in the Mars, but also there,

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there is quite some difference.

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So it's true, it's not 3,600 perfect spheres that are aligned.

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Moreover, there are different layers in the dorsal part of the bollop.

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It's typically only one glomerulus, but

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more ventrally in the ball up there you have multiple glomeruli on top of each

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other and deeper into the tissue and so on so there is an another another dimension

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there right so then in but whatever the the structuring that takes place to

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get the patterning of the glomeruli,

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there is a belief that that the the single genes expressed by the receptor neurons

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that in the end would also give

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identity to their exons, would in some way play a role in this process.

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Yes, that's been known for quite a while from genetic data. You can replace

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the coding region of a receptor by that of another one.

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In fact, we have even done in one case with an other G-protein copper receptor,

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the beta-2-anergic receptor, and you get a glomalus.

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Again, a reproducible, recognizable place.

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In some cases, it looks like it's a completely new glomalus that wasn't there

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before, but there is of course space if you have 3600 for a few more.

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You can also make smaller mutations down to point mutations in other receptors

00:18:19.346 --> 00:18:25.746
using gene targeting and you can create novel glomelar identity,

00:18:26.026 --> 00:18:28.206
so glomelar that probably are not there before.

00:18:28.946 --> 00:18:34.206
The receptor protein is also there along the axons all the way to the end and early in development.

00:18:36.320 --> 00:18:40.640
Suggesting that it has something to do mechanistically with fasciculation,

00:18:40.880 --> 00:18:41.920
coalescence, convergence.

00:18:42.660 --> 00:18:47.040
Exactly how that works at the molecular level is, I don't think,

00:18:47.040 --> 00:18:51.460
clear, or at least there is no consensus of how an old receptor could do that

00:18:51.460 --> 00:18:52.520
with such precision again.

00:18:53.400 --> 00:19:01.180
So then you spent quite some time then to try to show or identify the location

00:19:01.180 --> 00:19:06.540
of these different genes that the receptor neurons express in the genome.

00:19:07.640 --> 00:19:09.800
So what kind of pattern do you find there?

00:19:11.420 --> 00:19:15.220
The pattern I like to, the term I like to use is actually haphazard,

00:19:16.260 --> 00:19:21.380
which means maybe there is no clear pattern, but maybe it's not excluded that there is a pattern.

00:19:21.700 --> 00:19:26.480
There are in the mouse approximately 40 loci sites in the genome where you can

00:19:26.480 --> 00:19:27.580
find old receptor genes.

00:19:28.960 --> 00:19:34.880
Eight of them are solitary genes, which means megabases up and downstream,

00:19:35.080 --> 00:19:37.760
there is no other receptor gene in the genome.

00:19:38.200 --> 00:19:41.080
These are the exceptions. Most genes come in clusters.

00:19:41.480 --> 00:19:44.660
The largest cluster is approximately 300 auto-receptor genes,

00:19:44.860 --> 00:19:46.540
all stacked one next to the other.

00:19:46.760 --> 00:19:51.740
And the typical cluster has no other genes in them, non-auto-receptor genes,

00:19:51.880 --> 00:19:53.880
although of course there are also exceptions.

00:19:54.500 --> 00:20:00.520
So this pattern, this distribution is, I would like to say, haphazard.

00:20:00.520 --> 00:20:02.100
That there is no clear logic to it.

00:20:02.200 --> 00:20:06.300
It's not that every chromosome has one cluster or there are three huge ones

00:20:06.300 --> 00:20:10.440
or each cluster of genes is expressed in the same zone in the epithelium or

00:20:10.440 --> 00:20:13.500
encodes genes of the same family. Even that is not the case.

00:20:14.780 --> 00:20:19.060
For lack of a better term, and I welcome new terms, I'd like to call it haphazard.

00:20:19.720 --> 00:20:21.480
But how many genes do we have in the mouse?

00:20:23.069 --> 00:20:27.049
Genes with an intact open reading frame, approximately 1,200.

00:20:27.589 --> 00:20:31.869
In fact, the mouse genome is not completely sequenced. We check our favorite

00:20:31.869 --> 00:20:35.089
clusters once in a while, and the number of genes decreases,

00:20:35.089 --> 00:20:36.669
actually, from month to month.

00:20:36.749 --> 00:20:39.249
There are genes disappearing that are probably mistakes of assembly.

00:20:39.709 --> 00:20:44.289
That's a recent experience. So the jury is still out, but the number seems to

00:20:44.289 --> 00:20:46.589
converge to 1,200, maybe 1,100.

00:20:47.029 --> 00:20:48.129
But the total mouse genome?

00:20:49.349 --> 00:20:54.009
Probably 20,000, 25,000, so quite a significant fraction, yeah. Right, exactly.

00:20:54.949 --> 00:21:02.109
So here we have these 20,000 genes, but now of those 1,200 that relate to the

00:21:02.109 --> 00:21:06.089
receptor neurons, how much is the variability in base pairs of these genes?

00:21:07.429 --> 00:21:18.169
If you take two random odontoreceptor genes, the average is a nucleotide amino acid.

00:21:18.349 --> 00:21:22.669
I think amino acid homology was 33% or something like that. It's not very high.

00:21:23.609 --> 00:21:27.129
There are some motifs in the amino acid sequence.

00:21:27.949 --> 00:21:32.489
One of them is May-Dry-Vac. Another one is Fast-Cash. Easy to remember.

00:21:32.689 --> 00:21:36.749
Those are kind of typical for autumn receptors.

00:21:36.829 --> 00:21:40.889
If you see those two in a sequence, you have a very, very high likelihood that

00:21:40.889 --> 00:21:41.909
these are autumn receptors.

00:21:43.329 --> 00:21:46.829
So they come in families. You can define a family however you want.

00:21:47.269 --> 00:21:50.329
There have been, of course, debates about that. If it's 80% cut-off,

00:21:50.389 --> 00:21:55.589
60% cut-off. a nomenclature developed in 2002 by Stuart Firestone was based

00:21:55.589 --> 00:22:01.469
on these families and he was in the 200-something families of these 1,200 genes. Mm-hmm.

00:22:02.958 --> 00:22:07.658
So, but how long is the longest one you would find of all these 1,200 genes?

00:22:08.018 --> 00:22:13.818
They're all very similar in length. Approximately 1,000 nucleotides of about 330 amino acids.

00:22:14.038 --> 00:22:17.698
They have quite a short N-terminus and quite a short C-terminus.

00:22:17.798 --> 00:22:22.818
So, a big part of the protein is presumably in the membrane. Okay, good.

00:22:23.138 --> 00:22:28.838
So, as a family, as a total family, they're fairly uniform. So now we have this

00:22:28.838 --> 00:22:33.398
strange phenomenon that some seem tightly clustered on the genome and others

00:22:33.398 --> 00:22:37.718
are sort of singular, sitting out there somewhere in isolation.

00:22:38.958 --> 00:22:43.318
So what could be the consequence of grouping all these genes together?

00:22:43.478 --> 00:22:50.458
What could be a possible advantage in transcription or reproduction of a genome?

00:22:50.638 --> 00:22:55.078
Is there anything you can say about that? Well, typically gene families are clustered.

00:22:55.918 --> 00:23:01.538
That's the case in general genes that are related for which then multiple copies

00:23:01.538 --> 00:23:07.038
typically come in a cluster they could have evolved by unequal crossing over

00:23:07.038 --> 00:23:12.678
so by mistakes actually during meiosis we have an extra copy of the gene duplicated

00:23:12.678 --> 00:23:15.698
created which then can then mutate away,

00:23:17.078 --> 00:23:21.878
whether or not that creates an advantage is another issue but obviously having

00:23:21.878 --> 00:23:24.898
genes with the same function clustered.

00:23:26.818 --> 00:23:31.938
Opens the opportunity for local control of the cluster of regulatory elements that.

00:23:32.878 --> 00:23:39.638
Decide or help decide within that cluster which of the genes is turned on right but now so in,

00:23:40.338 --> 00:23:43.918
terms of the control this might already make a difference right so for olfaction

00:23:43.918 --> 00:23:48.178
do you have in mind that there is such a variability and also these control

00:23:48.178 --> 00:23:50.138
signals that for instance you want

00:23:50.158 --> 00:23:55.918
to have one control signal to switch on a whole group of receptor genes while

00:23:55.918 --> 00:23:58.138
you want to have a tighter control over another one.

00:23:58.238 --> 00:24:04.578
This might be also, let's say, differential for, let's say, the different subsystems

00:24:04.578 --> 00:24:06.598
that you would find in the epithelium, right?

00:24:06.638 --> 00:24:10.918
Where maybe one, you might have very coarse control over the gene expression

00:24:10.918 --> 00:24:13.598
and other regions, you want a very tight control over gene expression.

00:24:13.938 --> 00:24:17.278
So do you mean in terms of numbers of cells that express it? For instance, yeah.

00:24:17.418 --> 00:24:21.798
Yeah. Yeah, that's something that is, I think, underappreciated and also not

00:24:21.798 --> 00:24:28.018
so easy to quantify is that you find often in papers also that each receptor

00:24:28.018 --> 00:24:31.498
gene is expressed in one out of a thousand cells. Actually, it should be one in 1,200.

00:24:31.858 --> 00:24:36.038
Even that is not true. There is two orders of magnitude of difference.

00:24:36.138 --> 00:24:38.038
The champion is more 28. Right.

00:24:38.976 --> 00:24:42.216
For which, as far as I know, still no ligand has been found,

00:24:42.296 --> 00:24:46.216
and that's expressed in about 100,000 cells in a mouse. It's truly, again, a rule breaker.

00:24:46.996 --> 00:24:50.196
There are other genes that are expressed in just a few hundred cells.

00:24:50.636 --> 00:24:54.296
So the probability of expression, which we mean operationally,

00:24:54.296 --> 00:24:57.916
the frequency or the number of cells in a given mouse that expresses a given

00:24:57.916 --> 00:25:00.056
gene varies over two orders of magnitude.

00:25:01.636 --> 00:25:06.016
Is that evolutionarily determined? Are the genes that are expressed in many

00:25:06.016 --> 00:25:10.076
cells, are they more important? Therefore, there need to be more cells of them. I don't know.

00:25:10.756 --> 00:25:14.516
But it's, of course, interesting for us in the long run to look at it experimentally.

00:25:14.776 --> 00:25:21.896
What in the promoter, just upstream of the coding region, affects this probability. Right, exactly.

00:25:22.516 --> 00:25:25.876
Because another angle on this could also be because you're saying,

00:25:25.936 --> 00:25:29.736
well, from the perspective of olfaction, it looks haphazard, right? Like arbitrary.

00:25:30.536 --> 00:25:35.376
But you could also argue, well, look, but it's not impossible that some of these

00:25:35.376 --> 00:25:39.956
genes are expressed in other parts of the body of playing a different role.

00:25:40.496 --> 00:25:44.216
And that's for that you want to have certain kinds of control sequences at work.

00:25:45.016 --> 00:25:51.196
So that's an emerging story. There has been, ever since the beginning of the

00:25:51.196 --> 00:25:52.316
auto receptor gene saga,

00:25:52.556 --> 00:25:56.316
there's been papers about who are genes expressed in the testis,

00:25:56.356 --> 00:26:00.156
particularly in sperm, but many genes are expressed there perhaps less interesting.

00:26:00.316 --> 00:26:05.936
There has been some evidence that they may be involved in perhaps chemotaxis

00:26:05.936 --> 00:26:10.216
of sperm, swimming towards the egg and so on, but that's all quite limited.

00:26:10.916 --> 00:26:15.256
So apart from that, there are isolated cases of genes, odom receptor genes,

00:26:15.416 --> 00:26:16.936
that are expressed outside the nose.

00:26:17.076 --> 00:26:19.316
If they are also expressed in the nose and olfactory neurons,

00:26:19.476 --> 00:26:23.176
they would qualify as an odom receptor, not with the O from odorant or olfaction.

00:26:24.312 --> 00:26:26.812
If they're not expressed in the nose and only outside the nose,

00:26:27.012 --> 00:26:31.452
then you cannot even call them a nodal receptor. They have just been hijacked

00:26:31.452 --> 00:26:34.232
or used in evolution for something else.

00:26:35.332 --> 00:26:39.252
Now, the one that comes to mind is this Moritine-2.

00:26:39.392 --> 00:26:45.792
It has several other names, which is really a strange gene. It is expressed clearly in the nose.

00:26:46.772 --> 00:26:49.152
There's ligands for it and so on and so on. They have glomeli.

00:26:49.752 --> 00:26:52.312
It's also expressed in a small number of cells in kidneys.

00:26:52.312 --> 00:26:57.132
Kidneys and mice with a knockout in that gene have a problem with regulating

00:26:57.132 --> 00:27:02.552
their blood pressure, which is something you would never, never have thought to even look for.

00:27:03.452 --> 00:27:07.552
So it's something that needs to be looked at further.

00:27:07.712 --> 00:27:12.572
And indeed, in those cells in the kidney, the mechanisms that control the expression

00:27:12.572 --> 00:27:16.312
are probably different from those in the nose. They're not random.

00:27:16.612 --> 00:27:21.572
They're probably much more regulated and so on. So perhaps they have a different promoter.

00:27:21.712 --> 00:27:25.432
The same coding region can have two promoters, a few kilobases apart,

00:27:25.532 --> 00:27:28.552
and one promoter is used in the nose and the other one is used outside the nose.

00:27:28.652 --> 00:27:30.212
That would be one simple solution.

00:27:30.572 --> 00:27:34.892
Would you be willing to reconsider the notion of haphazard?

00:27:35.012 --> 00:27:37.992
That maybe it looks haphazard because not all the constraints have been taken

00:27:37.992 --> 00:27:42.812
into account, but if you would take on board the idea that these same receptors

00:27:42.812 --> 00:27:46.572
are also expressed in other parts of the body, at other points during development,

00:27:46.892 --> 00:27:52.152
for other functions possibly, Possibly that this requires other levels of control

00:27:52.152 --> 00:27:56.492
that then require this kind of structuring of the genome. Would you find that

00:27:56.492 --> 00:27:57.732
a reasonable alternative interpretation?

00:27:58.292 --> 00:28:02.452
So I referred with haphazard to the organization in the genome,

00:28:02.492 --> 00:28:04.032
not the expression per se. Okay.

00:28:04.372 --> 00:28:08.932
I don't think there is rampant expression of auto-receptor genes outside the

00:28:08.932 --> 00:28:10.972
nose, even in certain parts of development.

00:28:11.152 --> 00:28:13.772
Probably would have been found by now.

00:28:14.832 --> 00:28:19.012
So it's not the case that every odontoreceptor gene is at some point expressed somewhere else.

00:28:20.392 --> 00:28:25.532
On the other hand, many senior libraries, many express sequence stacks,

00:28:25.672 --> 00:28:30.332
ESTs, many microarrays that keep popping up odontoreceptors all the time to

00:28:30.332 --> 00:28:33.392
the annoyance often of these investigators because they don't know what to do with it.

00:28:33.632 --> 00:28:40.292
So I think it's been ignored a bit or underestimated too long in our field,

00:28:40.352 --> 00:28:41.872
this non-olfactory expression.

00:28:43.372 --> 00:28:46.932
But on the other hand, there is no rampant expression of OR genes outside the

00:28:46.932 --> 00:28:48.552
nose, I think, any time in development.

00:28:49.632 --> 00:28:53.912
Even though there is plenty of chemical sensing going on in other parts in the body.

00:28:54.252 --> 00:28:59.992
Yeah, so these O-receptors in the end don't have a very unique receptor structure.

00:29:00.172 --> 00:29:02.732
They're G-protein copper receptors, seven transmembrane proteins,

00:29:02.892 --> 00:29:06.612
so they're amino acid sequence snakes seven times through the membrane.

00:29:06.612 --> 00:29:12.572
Mean there's many other gpcrs in fact many of the drugs you buy in a pharmacy

00:29:12.572 --> 00:29:18.112
with a prescription are designed against gpcrs agonist or antagonist and what

00:29:18.112 --> 00:29:23.512
have you so from that point of view it's not surprising that some of these so-called

00:29:23.512 --> 00:29:26.552
or genes so because they have an or like sequence,

00:29:27.072 --> 00:29:34.152
are simply used by other cells to detect small molecules as their colleagues the non-or gpcrs,

00:29:34.692 --> 00:29:36.612
non-olfactory GPCRs as they do, right?

00:29:36.752 --> 00:29:41.672
Exactly right. That's indeed how pharmacologists talk now about their GPCR genes.

00:29:41.752 --> 00:29:43.932
They call them non-olfactory GPCRs, by the way.

00:29:44.032 --> 00:29:48.192
That's their GPCRs minus the 1200 that we work on.

00:29:48.572 --> 00:29:52.932
But it might then also imply that the direction the field is taking is also,

00:29:53.072 --> 00:29:57.432
well, maybe what we used to call an olfactory receptor gene,

00:29:58.212 --> 00:30:03.912
is actually part of a larger family of, let's say, ligand-bound receptors Receptors.

00:30:04.912 --> 00:30:08.292
And by accident, a subfamily of these have a specialization that they express

00:30:08.292 --> 00:30:12.092
in the epithelium. Is that not where things are going now?

00:30:13.092 --> 00:30:16.452
Well, I mean, this was known from the beginning. There are G-protein coupled

00:30:16.452 --> 00:30:21.472
receptors, and that's an ancient motif for many receptor types.

00:30:21.792 --> 00:30:28.052
So in that vein, 10 years ago, we reported this rather surprising finding.

00:30:28.132 --> 00:30:29.772
We did what we call the receptor swap.

00:30:29.952 --> 00:30:33.832
We replaced the coding region of a northern receptor, M71, for which we had ligands.

00:30:35.392 --> 00:30:38.032
Acetophenolbenzaldehyde, we replace it with the beta-2 adrenergic receptor,

00:30:38.212 --> 00:30:43.392
and that's the most, the best characterized GPCR, also I think the first one

00:30:43.392 --> 00:30:44.732
to be cloned 20 years ago.

00:30:45.572 --> 00:30:50.072
And lo and behold, the neuron that expressed now the beta-2 adrenergic receptor

00:30:50.072 --> 00:30:58.632
from the M71 locus now form a new glomalus at a location quite far from the M71 glomali.

00:30:58.632 --> 00:31:03.632
We also know that these neurons respond to beta-2AR agonists,

00:31:03.772 --> 00:31:08.052
isoproterol, in a dose-dependent fashion.

00:31:08.612 --> 00:31:13.752
So if you didn't know that in these mice the beta-2AR was expressed from this

00:31:13.752 --> 00:31:18.512
M71 locus, and I would show you all these images, you would not be able to tell the difference.

00:31:18.772 --> 00:31:24.212
So that's another, of course, artificial experimental evidence that perhaps

00:31:24.212 --> 00:31:27.132
there is nothing so special about organ receptors in these regards.

00:31:28.632 --> 00:31:31.932
Now, there are a lot of GPCRs expressed in the nose, in olfactory neurons.

00:31:32.012 --> 00:31:37.632
That's another thing that's been neglected, perhaps a bit on purpose by our field.

00:31:38.172 --> 00:31:43.412
Dozens and dozens of GPCRs are expressed. It's come up in several screens already, in several papers.

00:31:43.772 --> 00:31:47.192
Some are expressed in olfactory neurons, like the dopamine type 2 receptor,

00:31:47.712 --> 00:31:51.932
very frequent used for drugs against schizophrenia.

00:31:52.752 --> 00:31:57.772
All olfactory neurons, all mature neurons express the dopamine type 2 receptor, which is also a GPCR.

00:31:57.772 --> 00:32:04.152
And so why is the OR, can it instruct axons to form glomeruli and not other

00:32:04.152 --> 00:32:08.852
GPCRs that are expressed there anyway is another issue for further research.

00:32:08.912 --> 00:32:12.512
Perhaps it's a question of the timing of expression, the level,

00:32:12.632 --> 00:32:17.712
or are they expressed at extremely high levels or something else we are missing. Right, exactly.

00:32:19.552 --> 00:32:26.012
So now we have a bit of an idea of this sorting problem you've seen in the olfactory bulb.

00:32:26.012 --> 00:32:32.352
Bulb, that means you have a huge population, a million plus receptor neurons

00:32:32.352 --> 00:32:36.652
sitting there, sending their projections into the olfactory bulb,

00:32:36.832 --> 00:32:40.892
initially in a rather disorganized way.

00:32:41.332 --> 00:32:46.512
And then if you're by some sort of magic, it comes out sorted at the other end

00:32:46.512 --> 00:32:50.232
and all these processes terminate in their preferred glomerulus.

00:32:54.236 --> 00:32:57.776
And in some sense, we looked at the different aspects of that sorting story

00:32:57.776 --> 00:33:01.136
that could play a role. And we see actually all of them are rather problematic.

00:33:01.776 --> 00:33:04.516
Like the idea of zoning is problematic.

00:33:06.336 --> 00:33:10.236
So what are the alternative interpretations of this? What would be an alternative

00:33:10.236 --> 00:33:12.596
view of how this sorting process could work?

00:33:13.896 --> 00:33:17.236
So a model that we proposed a while ago, and we talked about this this morning,

00:33:17.256 --> 00:33:21.036
is that of homotypic and homophilic interactions.

00:33:21.036 --> 00:33:25.116
Interactions, that the auto-receptor protein, which we know is expressed very

00:33:25.116 --> 00:33:27.576
highly along the axons all the way to the end,

00:33:27.756 --> 00:33:32.476
that auto-receptor proteins of the same type, so homotypic, interact with each

00:33:32.476 --> 00:33:39.736
other, homophilic, and that would either by itself create some kind of a specific adhesion or perhaps,

00:33:39.896 --> 00:33:44.016
combined with a signal transduction event in the axons, that would cause these

00:33:44.016 --> 00:33:46.876
axons to fasciculate, to form fascicles, to form bundles,

00:33:47.036 --> 00:33:50.656
which is probably a step that leads towards the formation of a glomerulus,

00:33:50.776 --> 00:33:56.616
axons that stick together and at some point perhaps even stop growing and form

00:33:56.616 --> 00:33:59.356
their glomerulus. That is one model that we favor.

00:33:59.456 --> 00:34:03.476
It would be a parsimonious model evolutionarily because if a new-ordered receptor

00:34:03.476 --> 00:34:08.596
is created in evolution with an amino acid sequence that's sufficiently different.

00:34:08.816 --> 00:34:13.236
Then these homophilic interactions are different now, and now you would have

00:34:13.236 --> 00:34:17.056
a new identity and a new glomerulus created without anything else.

00:34:17.056 --> 00:34:21.916
But wait, I'm not sure if that's the whole story then, because you would still

00:34:21.916 --> 00:34:27.456
might have to generate an overabundance of these processes to have this sorting

00:34:27.456 --> 00:34:30.036
process, self-organizing sorting to work out,

00:34:30.196 --> 00:34:33.236
because you lack specificity now. You mean neurons and axons?

00:34:33.356 --> 00:34:36.456
That's right. I mean, these receptor neurons that throw out these processes,

00:34:36.676 --> 00:34:41.896
if they have these attractive and repellent interactions, you might want to

00:34:41.896 --> 00:34:46.536
throw out quite a large number of them in the hope that a small subset will

00:34:46.536 --> 00:34:47.856
actually reach the target or not.

00:34:47.856 --> 00:34:53.536
So that's the issue of selection and, again, something that is, I think, ignored or….

00:34:54.974 --> 00:34:59.254
Overlooked in the field is how many, what's the success rate of the whole process?

00:35:00.014 --> 00:35:06.194
To put it in a simple way, of every hundred neurons in the epithelium that are born and project an axon,

00:35:06.734 --> 00:35:13.014
that gets to the bulb, how many of those send their axon to the correct place

00:35:13.014 --> 00:35:16.474
in the sense that it innervates a correct glomalus and it survives, right?

00:35:16.594 --> 00:35:19.614
That's a very simple question. What is the success rate? And we don't know that.

00:35:20.374 --> 00:35:24.454
We intuitively think that it could be very high, Perhaps as close as 100%,

00:35:24.454 --> 00:35:25.934
but there's no such thing in biology.

00:35:26.334 --> 00:35:30.794
If it's quite low, though, let's say it's less than 50%, then there is an opportunity

00:35:30.794 --> 00:35:35.454
for selection, for negative selection, if you wish, for weeding out processes,

00:35:35.694 --> 00:35:39.414
as you call them, axons that are completely off the wall and project to the

00:35:39.414 --> 00:35:41.394
wrong part of the bulb and are hopelessly lost.

00:35:44.154 --> 00:35:48.874
Or axons that enter a glomalus that is very close, but not exactly of the same

00:35:48.874 --> 00:35:53.354
type, right? And they could, over a period of hours of days, being eliminated.

00:35:53.734 --> 00:35:56.534
So there is no method to look at the success rate.

00:35:57.654 --> 00:36:02.434
And also when people look at these images, I don't think they think about that,

00:36:02.554 --> 00:36:05.494
that some axons could not make it.

00:36:05.534 --> 00:36:08.854
It's just not, in that sense, these pictures are somewhat misleading perhaps.

00:36:09.034 --> 00:36:13.114
They give you the end product, the final results, but it doesn't tell you about

00:36:13.114 --> 00:36:14.014
the mechanism necessarily.

00:36:15.463 --> 00:36:20.603
Possibly in different stages of development, you might see signatures of that process at work.

00:36:20.943 --> 00:36:25.003
So in general, the brain has an exuberance, as it's often called.

00:36:25.463 --> 00:36:30.043
More neurons produced than necessary, more axonal processes produced than necessary.

00:36:30.763 --> 00:36:34.723
That's not the case, by the way, with olfactory axons. They never have multiple

00:36:34.723 --> 00:36:39.543
processes, just one per, at least that's a dogma, one per neuron.

00:36:40.443 --> 00:36:45.503
But again, I would not be surprised at all if someone finds out that the success rate is very small,

00:36:45.823 --> 00:36:49.463
very low, that there is an exuberance of neurons being produced,

00:36:49.563 --> 00:36:55.143
that many of them never make it, and they get removed so quickly from the system

00:36:55.143 --> 00:36:58.963
within hours of days, and everything is asynchronously developing anyway,

00:36:59.123 --> 00:37:00.363
that we would just be missing them.

00:37:00.363 --> 00:37:04.423
But if you would look specifically for them, and really with very specific methods,

00:37:04.523 --> 00:37:08.543
perhaps you could find them. There is a lot of cell death going on in the olfactory epithelium.

00:37:08.703 --> 00:37:13.163
You can use any marker you wish for apoptosis, even in adult mice.

00:37:13.283 --> 00:37:16.563
Plenty and plenty of cells dying, as it decays in every epithelium.

00:37:17.003 --> 00:37:23.203
So at least there is a basis there for cell death playing a role in scalloping,

00:37:23.323 --> 00:37:25.403
if you wish, these projections.

00:37:26.003 --> 00:37:33.063
Right. So now, another step, because there's a lot of work behind these observations

00:37:33.063 --> 00:37:34.823
that you're sharing now with me.

00:37:36.143 --> 00:37:41.783
But then as one step in that whole process, you also decided to clone a mouse.

00:37:42.503 --> 00:37:45.703
So how did that help you? How did that help you in understanding this system?

00:37:45.983 --> 00:37:51.323
So that was for the gene regulation issue. issue, a very popular idea back from

00:37:51.323 --> 00:37:52.403
the early days from 1991,

00:37:52.643 --> 00:37:59.163
the Bercouzel paper, was that the way an olfactory neuron expresses one gene

00:37:59.163 --> 00:38:06.523
stably and irreversibly at high levels is by some kind of genetic alteration in the genome.

00:38:07.203 --> 00:38:08.743
That's the case with lymphocytes.

00:38:09.443 --> 00:38:14.223
B cells make one antibody with a heavy and a light chain, and T-cell receptors,

00:38:14.303 --> 00:38:17.803
the Let's go for beta t's as if one alpha and one beta chain.

00:38:19.047 --> 00:38:22.967
And they do so by irreversibly changing their genetic material.

00:38:23.147 --> 00:38:26.987
There are pieces of DNA that are lost, obviously irreversible,

00:38:27.087 --> 00:38:33.527
and in some cases inverted, that underlie this.

00:38:34.267 --> 00:38:38.487
But surely the problem of cell faith is broader than that, right?

00:38:38.547 --> 00:38:42.547
It's not only for the lymphocytes. I mean, any cell at some point in development

00:38:42.547 --> 00:38:49.787
is committed to become of a certain identity, like a skin cell or a liver cell or a heart cell, etc.

00:38:50.067 --> 00:38:52.907
So why do you highlight the lymphocytes in this case?

00:38:53.647 --> 00:38:56.147
Because they have so many similarities with olfactory neurons.

00:38:56.407 --> 00:39:02.647
They have a large number of genes at their disposal, and each neuron or each

00:39:02.647 --> 00:39:06.147
lymphocyte expresses only one of them. I mean, it's not only me who makes this analogy.

00:39:06.527 --> 00:39:11.367
So this was pervasive in our thinking. I must say that many of the people working

00:39:11.367 --> 00:39:13.967
in olfaction, at least in the early days, were actually ex-immunologists,

00:39:14.247 --> 00:39:18.067
had a PhD or a postdoc in immunology, so maybe they were thinking along these lines.

00:39:19.567 --> 00:39:24.427
But don't you agree that today, we might as well say, well, the analog might

00:39:24.427 --> 00:39:25.587
as well have been a skin cell?

00:39:26.207 --> 00:39:30.367
Well, but skin cells don't have to acknowledge a large number of genes of the

00:39:30.367 --> 00:39:33.727
same family at the disposal of which they have to pick one for expression.

00:39:33.907 --> 00:39:35.007
That's just not the case.

00:39:35.227 --> 00:39:38.687
But in the end, they have to pick a subset of all possible genes to express.

00:39:38.987 --> 00:39:42.927
So, to go back even longer in history,

00:39:43.127 --> 00:39:48.247
when these gene rearrangements in B lymphocytes were discovered in the 70s by

00:39:48.247 --> 00:39:53.547
Susumu Tonagawa and others, there was the idea that other aspects of differentiation

00:39:53.547 --> 00:39:57.207
and development would also be regulated by irreversible gene rearrangements.

00:39:57.927 --> 00:40:01.287
But the cloning experiments of John Gurdon and others were a strong argument

00:40:01.287 --> 00:40:07.267
against that because you could produce normal or fairly normal animals from differentiated cells.

00:40:07.447 --> 00:40:11.447
And if these cells had shattered pieces of DNA irreversibly,

00:40:11.587 --> 00:40:13.447
then they would not have been able to do that.

00:40:13.727 --> 00:40:18.407
But indeed, there was a period of time, 30, 40 years ago, where it was thought

00:40:18.407 --> 00:40:24.087
that many differentiation processes would be….

00:40:25.105 --> 00:40:29.025
Governed by irreversible changes. And we don't think that's the case anymore.

00:40:29.025 --> 00:40:32.305
So it's basically like, look, your faith is set by some switch.

00:40:32.785 --> 00:40:36.505
And now basically, in some sense, you irreversibly wipe out a bit of your genome.

00:40:36.705 --> 00:40:38.225
So from then on, that's it.

00:40:38.565 --> 00:40:43.225
And also the discovery of the possibility of making induced pluripotent stem

00:40:43.225 --> 00:40:45.445
cells, the iPS cells, was another argument against that.

00:40:45.465 --> 00:40:50.925
You can take a differentiated cell and sort of reconvert it into an embryonic

00:40:50.925 --> 00:40:53.845
stem cell or like cell that can go any way.

00:40:53.845 --> 00:40:56.925
Way that's also an argument against that irreversible changes

00:40:56.925 --> 00:40:59.765
of any type actually not necessarily genetic but then

00:40:59.765 --> 00:41:02.905
how did this this cloned mouse that that you build

00:41:02.905 --> 00:41:05.805
was quite a tour in itself to to build it

00:41:05.805 --> 00:41:13.125
help you to understand this this determination and stabilization of of the cell

00:41:13.125 --> 00:41:16.945
faith in the olfactory system so if if neurons that express a given receptor

00:41:16.945 --> 00:41:20.525
let's take our favorite receptor again m71 if neurons expressing that receptor

00:41:20.525 --> 00:41:25.245
have made an irreversible genetic alteration to do so,

00:41:25.345 --> 00:41:31.345
then a mouse cloned from the nucleus of such a neuron would be monoclonal, essentially.

00:41:31.585 --> 00:41:34.965
All the neurons, or the majority of them, would express M71.

00:41:35.845 --> 00:41:39.805
That was the prediction. If these changes are irreversible, if they're somehow

00:41:39.805 --> 00:41:42.845
reversible during the cloning procedure, which not many people have thought

00:41:42.845 --> 00:41:45.825
about, but I sometimes think about this, if they would have been reversible

00:41:45.825 --> 00:41:48.825
during the cloning procedure, then we draw the wrong conclusion.

00:41:49.785 --> 00:41:53.845
So it was essentially a negative result. We got, let's say, a normal mouse out

00:41:53.845 --> 00:41:56.245
of the nucleus of a neuron expressing M71.

00:41:56.385 --> 00:41:59.845
These neurons expressed not necessarily M71, but other own receptor genes.

00:42:00.225 --> 00:42:05.705
Hence, there were no irreversible changes. If you clone a mouse with a lymphocyte,

00:42:05.705 --> 00:42:09.145
Rudy Yenish has done that around the same time, then you really get a monoclonal

00:42:09.145 --> 00:42:11.285
mouse. These are spectacular phenotypes.

00:42:11.505 --> 00:42:14.525
All the B lymphocytes in that mouse make just the same antibody.

00:42:14.685 --> 00:42:17.985
Right. But how come that cloned mouse is even viable?

00:42:18.285 --> 00:42:21.705
It might have been possible. It would not even have been a viable cell. Thank you for watching.

00:42:22.900 --> 00:42:26.980
Yeah, I think our paper and that of Rudy Inej and Richard Axel was the first

00:42:26.980 --> 00:42:29.860
to clone with post-mitotic mature neurons.

00:42:29.960 --> 00:42:33.460
That was not necessarily given.

00:42:33.640 --> 00:42:36.880
The success rate of cloning by nuclear transfer is quite low,

00:42:36.960 --> 00:42:39.280
I must say. It's in the single-digit percentages.

00:42:39.880 --> 00:42:45.040
Some of the data are a bit massaged in these tables, but it's never more than 10%.

00:42:46.140 --> 00:42:51.060
And so it could still be that the other 90% die for fundamental biological reasons.

00:42:51.060 --> 00:42:55.260
We will only know when we're able to get the frequency higher.

00:42:55.720 --> 00:43:00.680
Right. Okay, but so now that you know that there might still be an irreversible

00:43:00.680 --> 00:43:07.540
change, but it doesn't translate if you clone from that cell a whole new mouse, right?

00:43:07.920 --> 00:43:11.180
So what now is your alternative interpretation?

00:43:12.640 --> 00:43:17.900
Well, if it's not genetic, it must be epigenetic. That's the more modern,

00:43:17.940 --> 00:43:19.520
perhaps fashionable way of looking at that.

00:43:19.520 --> 00:43:25.300
But wait, that could also be, imagine I have another cell that's expressing

00:43:25.300 --> 00:43:30.540
other genes that is controlling the expression of the genes in this receptor neuron.

00:43:31.320 --> 00:43:35.640
So now you clone only from this receptor neuron, but this controlling unit is gone.

00:43:36.360 --> 00:43:41.040
Now the control signal is gone. So this receptor neuron again is expressing its full genome.

00:43:43.569 --> 00:43:47.929
Yes, but at least that gene or receptor gene that was expressed in the original

00:43:47.929 --> 00:43:50.269
cell, that gene was not irreversibly altered.

00:43:50.749 --> 00:43:53.549
That's right, exactly. That's what we said, nothing more. Okay,

00:43:53.609 --> 00:43:58.589
so not irreversibly changed just within that one cell.

00:43:59.249 --> 00:44:03.809
So you do consider the possibility that within the organism there might be additional

00:44:03.809 --> 00:44:05.429
control signals that regulate that.

00:44:06.109 --> 00:44:10.409
Well, what I was worried then and still a bit now is that experimentally during

00:44:10.409 --> 00:44:13.469
the process of nuclear transfer, which is a complex procedure,

00:44:13.589 --> 00:44:19.909
which we don't understand, that change that was present in the M71 locus was somehow reverted.

00:44:20.089 --> 00:44:25.389
If you have a thing that flips back and forth, it just flips back, right?

00:44:25.509 --> 00:44:28.149
And then we don't see it anymore, but that doesn't mean there was no change

00:44:28.149 --> 00:44:30.289
before that. Sure, absolutely.

00:44:30.329 --> 00:44:43.889
Because maybe the whole confirmation of the DNA was such that it was put into

00:44:43.889 --> 00:44:47.509
a metastable state that prevented further transcription.

00:44:48.829 --> 00:44:52.729
But that by, let's say, perturbing the system again in the cloning procedure,

00:44:53.049 --> 00:44:55.809
it could sort of flip back into a state that could express itself.

00:44:56.129 --> 00:45:01.129
I can see that. But so now if you say epigenetic, that's of course a little

00:45:01.129 --> 00:45:05.109
bit tricky because at this point, epigenetic just means, well,

00:45:05.209 --> 00:45:08.389
some factor that's not genetic, right?

00:45:08.469 --> 00:45:13.969
But that basically could be from the whole of the universe to the diet to other

00:45:13.969 --> 00:45:16.689
cells, developmental trajectories, whatever.

00:45:16.809 --> 00:45:19.609
So if you say epigenetic, what would you have exactly in mind?

00:45:20.009 --> 00:45:23.449
Well, that's not what I say, but that's what other people say.

00:45:23.529 --> 00:45:28.109
And indeed, it's very broad. I mean, in some ways it doesn't say very much because

00:45:28.109 --> 00:45:29.489
it only says it's not genetic.

00:45:29.649 --> 00:45:34.169
That's exactly right. That we sort of knew there is no genetic change. The DNA isn't changed.

00:45:34.509 --> 00:45:39.429
We think it's not changed in the organ receptor gene locus. But I would…,

00:45:40.716 --> 00:45:44.256
I think that at this point in time, we really don't have a good view of how,

00:45:44.456 --> 00:45:49.656
I mean, I'm the first to admit that, how a neuron expresses one allele of one

00:45:49.656 --> 00:45:51.896
gene at high levels. We just don't understand that.

00:45:52.116 --> 00:45:55.276
It sort of have clues of why it could be a small number of genes,

00:45:55.416 --> 00:46:02.736
but why it's just one, that is very difficult for anyone to think on or show experimentally.

00:46:03.016 --> 00:46:05.816
Okay, but then what's the next step there to solve this?

00:46:07.616 --> 00:46:12.276
Probably development of new technologies miniaturization we have to work with

00:46:12.276 --> 00:46:16.436
single cells uh one can sort cells expressing the same receptor using a cell

00:46:16.436 --> 00:46:20.736
sorter with gfp but even then you look at the population of cells so we have

00:46:20.736 --> 00:46:25.416
to look at single cell and that's all coming uh coming along now there's rna

00:46:25.416 --> 00:46:27.136
seek is now being developed for single cells,

00:46:28.336 --> 00:46:33.696
um so i think it's a as usual new new technologies will um give us new ways

00:46:33.696 --> 00:46:34.536
of looking at all problems.

00:46:36.656 --> 00:46:41.436
But without a clear hypothesis, the technology might also lead you astray.

00:46:43.916 --> 00:46:48.176
Yeah. Or hypotheses, multiple hypotheses.

00:46:48.316 --> 00:46:51.636
You want to ask, basically, neurons that express receptor A,

00:46:52.376 --> 00:46:54.856
how are they different from neurons expressing receptor B?

00:46:54.956 --> 00:46:59.376
And let's say that A and B are two similar genes in the same cluster, as close as you can get.

00:46:59.496 --> 00:47:04.856
What is different between those cells? That would be a very simple approach approach, right?

00:47:05.316 --> 00:47:08.836
And you would take anything you find differentially expressed or differentially

00:47:08.836 --> 00:47:12.276
methylated or hypomethylated because one of them could be causative.

00:47:12.616 --> 00:47:16.856
Others could be the consequence of neurons expressing receptor A versus B,

00:47:16.956 --> 00:47:21.936
but other changes or differences could be explained or help explain why it's

00:47:21.936 --> 00:47:24.536
receptor A in one versus the other.

00:47:24.596 --> 00:47:29.196
But I think in the long run, we have to look at single cells, but it's possible now.

00:47:29.276 --> 00:47:32.716
There is really a big, big progress in single cell studies.

00:47:33.136 --> 00:47:36.456
But you think to do that effectively, you do need new technologies.

00:47:38.402 --> 00:47:42.542
Yeah, but that's always been the case, no? Well, it depends.

00:47:42.842 --> 00:47:47.282
I mean, given the question you posed, you might have to develop a specific technology,

00:47:47.502 --> 00:47:49.982
but you don't have to wait for things to show up at the horizon.

00:47:50.882 --> 00:47:55.962
But I mean, in your research, you're very technology heavy in your approach, right?

00:47:55.982 --> 00:48:02.142
So one thing you described is this nanostring system that you have been using

00:48:02.142 --> 00:48:06.782
to identify, and also other aspects of this whole regulatory system

00:48:07.022 --> 00:48:12.822
within the cell for gene expression around this notion of the P element.

00:48:13.922 --> 00:48:18.642
So what has been the insight there with respect to this regulation question?

00:48:19.142 --> 00:48:23.542
So we have adopted nanostring because there was probably still is no good method

00:48:23.542 --> 00:48:27.442
to look at all these organ receptor genes at the same time in the same sample.

00:48:28.742 --> 00:48:33.162
Typical way of looking at it is by qPCR, quantitative PCR, but that's really

00:48:33.162 --> 00:48:37.422
asking a lot doing that for hundreds of genes from one sample, a lot of pipetting.

00:48:37.962 --> 00:48:44.062
There's microarrays. I think their specificity is somewhat questionable, to say it nicely.

00:48:45.042 --> 00:48:48.842
Often these probes are from the 3-prime non-translated region,

00:48:48.982 --> 00:48:52.802
which is computationally determined, so not experimentally validated,

00:48:53.102 --> 00:48:54.762
because it's difficult to do so.

00:48:55.162 --> 00:49:00.262
So we have chosen for this nanostring, with which, since we chose only to make

00:49:00.262 --> 00:49:04.422
probes against all receptor coding regions, we could only look at at half the genes.

00:49:04.762 --> 00:49:09.702
So it's for us an assay. We can really look at close to 600 genes have the repertoire

00:49:09.702 --> 00:49:14.202
in one sample of RNA of about a microgram without any kind of amplification.

00:49:14.882 --> 00:49:18.562
It's an assay. I mean, by itself it doesn't show anything. And with that assay,

00:49:18.682 --> 00:49:25.042
we showed that mice that lacked at a mutation in this 317 base pair element,

00:49:25.122 --> 00:49:26.102
which we call the P element.

00:49:27.702 --> 00:49:32.202
That there are 10 genes differentially expressed, nine are downregulated,

00:49:32.282 --> 00:49:36.722
there is less RNA in the mutant mouse versus the wild type, and one is slightly upregulated.

00:49:36.862 --> 00:49:40.882
And they're all within about 200 kilobase from the so-called P elements.

00:49:41.162 --> 00:49:48.362
So that shows that that element somehow regulates the expression of OR genes

00:49:48.362 --> 00:49:50.462
in the cluster at the organism level.

00:49:51.382 --> 00:49:57.342
And you believe that this might be a key step in determining the faith of these receptor neurons?

00:49:57.702 --> 00:50:03.522
Yeah, one of them. It's not the only one. One, there is, we also said that clearly in our paper,

00:50:04.622 --> 00:50:08.962
that it's of course not by itself explaining how an olfactory neuron expresses

00:50:08.962 --> 00:50:12.962
one allele of one gene, but it's one of the several layers,

00:50:14.808 --> 00:50:19.868
Possibly hierarchical layers of control mechanisms that altogether ensure that

00:50:19.868 --> 00:50:23.448
the large majority, if not all, mature neurons expressing one allele of one gene.

00:50:23.568 --> 00:50:27.028
But by itself, it cannot be responsible for that.

00:50:27.328 --> 00:50:30.388
So how complex do you think is this control hierarchy? Yeah.

00:50:31.348 --> 00:50:34.668
Again, we will answer that when we know the whole hierarchy.

00:50:36.648 --> 00:50:41.428
It's not going to be solved immediately. I still have many years to go before my pension.

00:50:43.988 --> 00:50:48.248
And it has multiple aspects to it, multiple levels. There is also cellular selection.

00:50:48.468 --> 00:50:52.788
I believe that occasionally neurons are produced that make two receptors or maybe even more.

00:50:53.268 --> 00:50:57.668
And perhaps they are lost somehow, lost in the system by negative selection

00:50:57.668 --> 00:50:59.568
and that you can look for that too.

00:50:59.728 --> 00:51:03.908
It would be another control mechanism, right? You produce, you eliminate the cells you don't want.

00:51:04.948 --> 00:51:08.048
So it's not going to be solved anytime soon. The journals, of course,

00:51:08.068 --> 00:51:11.988
like us to claim in our papers in top journals in the title and so on that this

00:51:11.988 --> 00:51:13.348
is now the final breakthrough.

00:51:15.348 --> 00:51:20.888
But how many layers of control do you expect? Is it like single digits? 17.

00:51:23.348 --> 00:51:27.148
No, multiple. And at a different genomic level,

00:51:27.788 --> 00:51:33.968
positioning of clusters for expression, there's some evidence for that recently

00:51:33.968 --> 00:51:40.448
with nuclear aggregation that the gene that's expressed is in a different position

00:51:40.448 --> 00:51:42.048
of the nucleus than the other genes.

00:51:42.128 --> 00:51:46.368
That could be one of the mechanisms, but it cannot explain why it's only one, right? Right.

00:51:46.868 --> 00:51:48.768
That's always the problem. Why is it just one?

00:51:51.428 --> 00:51:56.668
But it's not, I mean, I think a satisfying level of insight,

00:51:56.868 --> 00:52:00.628
the question is how much, when are you satisfied with saying, I've understood this.

00:52:00.648 --> 00:52:06.908
A satisfying level of insight is feasible, conceivable, the next decade or two, but not sooner.

00:52:08.268 --> 00:52:15.028
And we hope, of course, that it has some general relevance, that we have not

00:52:15.028 --> 00:52:19.108
just explained how this particular weird family of genes is controlled,

00:52:19.288 --> 00:52:22.268
but that it has some insights that are more generally relevant to biology.

00:52:22.268 --> 00:52:27.368
Exactly right, because we started the conversation with how you use the olfactory

00:52:27.368 --> 00:52:29.228
system as a model to study development.

00:52:29.528 --> 00:52:33.328
Yeah. Right? But now, in some sense, we ended up dealing with a question that

00:52:33.328 --> 00:52:37.128
seems rather specific for the olfactory system, which is, how do I get such

00:52:37.128 --> 00:52:40.528
a precise expression of a single gene in a single neuron?

00:52:40.688 --> 00:52:44.308
So, what's this telling us in the end about development?

00:52:46.721 --> 00:52:50.641
Well, again, we will say this at the end, whether it was worth it and whether

00:52:50.641 --> 00:52:52.401
it was. I want to know it now.

00:52:52.821 --> 00:52:58.561
I was once a few years ago with Michael Brown in Beijing, coincidentally at

00:52:58.561 --> 00:53:01.241
the same time at an institute, and the graduate students all asked him,

00:53:01.261 --> 00:53:04.361
you know, how do I find an interesting biological problem, right,

00:53:04.441 --> 00:53:06.461
that gives me a Nobel Prize like he got?

00:53:07.321 --> 00:53:10.161
And he had a very good answer. They said you can pick almost any problem to

00:53:10.161 --> 00:53:12.541
start with, and you have to dig deeper and deeper and deeper.

00:53:12.541 --> 00:53:16.961
And when you hit very deeply, you will come to fundamental principles and mechanisms.

00:53:17.801 --> 00:53:24.041
So the angle or the approach point at which you start to study biological phenomenon

00:53:24.041 --> 00:53:26.801
or question perhaps matters less. It's how deep you go.

00:53:27.421 --> 00:53:33.901
But I constantly try to remind myself that we are not working on just the sense of smell of a mouse.

00:53:33.901 --> 00:53:39.581
You could just say that very honestly, that we hope that what we find and what

00:53:39.581 --> 00:53:44.581
we uncover, that is more important than just olfactory system of the mouse.

00:53:44.761 --> 00:53:47.361
That is a conscious leitmotif.

00:53:47.941 --> 00:53:53.861
If you wish, it's a hope and a plan.

00:53:54.241 --> 00:53:58.841
Right. So then to get to the finish line, two things.

00:53:58.841 --> 00:54:04.041
So, actually, you told me that it's exactly 20 years ago that you got initiated

00:54:04.041 --> 00:54:08.601
in this experimental study of olfaction, when you entered the lab of Axel as

00:54:08.601 --> 00:54:10.641
a postdoc. Yeah. That's correct, yeah?

00:54:12.341 --> 00:54:16.681
And so, now, given your experience in this field and also your many accomplishments,

00:54:16.961 --> 00:54:22.081
what would be Peter's law that we should adhere to in trying to understand how the brain works?

00:54:24.021 --> 00:54:27.421
Well, I don't like this question to begin with, how the brain works.

00:54:27.421 --> 00:54:32.481
That is so overly ambitious and probably even nonsensical, you can only hope

00:54:32.481 --> 00:54:37.821
at least with the present technologies to understand a bit of it, an aspect of it.

00:54:38.081 --> 00:54:43.101
Perhaps one circuit, one small step, it's some kind of Flemish modesty perhaps,

00:54:44.261 --> 00:54:49.481
that we, you know, perhaps with time and when we understand more smaller bits

00:54:49.481 --> 00:54:54.181
of it, more deeper and fundamental, we can… But I definitely never said that

00:54:54.181 --> 00:54:56.941
or never will claim that we want to figure out how the brain works.

00:54:56.941 --> 00:54:59.041
That is such a big, big question so far away.

00:54:59.401 --> 00:55:01.621
One has to maybe say this in grant proposals.

00:55:02.421 --> 00:55:04.061
So Peter's law is to be modest.

00:55:05.601 --> 00:55:08.241
And try to answer a problem that

00:55:08.241 --> 00:55:11.901
is answerable at that time with the technologies available at that time.

00:55:12.181 --> 00:55:14.781
But I think other people have said that too and realized that too.

00:55:15.461 --> 00:55:19.141
It's solving the solvable or Peter Medawar said that, right? Okay.

00:55:19.381 --> 00:55:25.361
But then the other hand is, so five years from now, I'm going to go to Frankfurt.

00:55:25.361 --> 00:55:28.641
For it and I'm going to confront you with your predictions of today.

00:55:29.921 --> 00:55:35.921
So what's the prediction that you're most passionate about today that you really

00:55:35.921 --> 00:55:39.601
spent most of your time on that you really want to have tested five years from

00:55:39.601 --> 00:55:42.961
now that I can confront you with then? Well the.

00:55:44.336 --> 00:55:46.576
But that's, again, technologically is the single-cell studies,

00:55:46.676 --> 00:55:50.176
I think. But I'm not the only one who's thinking that. But I want a prediction, Peter.

00:55:50.896 --> 00:55:53.876
But that is coming so clearly there, and there's not much published,

00:55:53.936 --> 00:55:55.656
and it will give us really new insights.

00:55:56.676 --> 00:56:00.536
Because we typically, when we look at the biological phenomenon,

00:56:00.656 --> 00:56:02.856
we look at the population of cells, and we are missing a lot.

00:56:02.996 --> 00:56:08.076
For instance, to come back to our p-element, the p-element shows a reduction

00:56:08.076 --> 00:56:11.456
in expression at the population level.

00:56:11.556 --> 00:56:14.796
We all hope that we have a nice Gaussian curve, right, which is shifted.

00:56:15.216 --> 00:56:21.016
But if the Gaussian curve is split into a bimodal curve, you would get exactly the same results.

00:56:21.116 --> 00:56:24.116
And it's actually erroneous results because we're now misled.

00:56:24.796 --> 00:56:28.616
So I really believe for our system and the things we are interested in,

00:56:28.696 --> 00:56:31.156
we have to look at single cells. It is doable.

00:56:31.336 --> 00:56:33.636
We are doing and other people will do it. And in five years,

00:56:33.676 --> 00:56:36.376
I think there will be nice insights coming from that.

00:56:36.536 --> 00:56:39.176
But that's a very modest prediction, right? So you're saying five years from

00:56:39.176 --> 00:56:43.636
now, I'll be able to look into single cells in the olfactory system.

00:56:44.016 --> 00:56:46.616
And see their genetic expression dynamics.

00:56:47.236 --> 00:56:50.596
It's already possible, yes, with RNA-seq. Yeah, but if you can already do it,

00:56:50.616 --> 00:56:52.696
it's not a very exciting prediction for five years from now.

00:56:52.716 --> 00:56:55.076
Well, but also, do we get something interesting out of that?

00:56:55.176 --> 00:57:00.096
Or will we be lost in details or in variability and so on?

00:57:00.176 --> 00:57:03.336
I hope and I believe that there will be new insights coming out of it,

00:57:03.376 --> 00:57:04.556
which we didn't even imagine.

00:57:04.776 --> 00:57:08.996
But would you say five years from now, you have nailed this problem of the cell

00:57:08.996 --> 00:57:10.676
phase stabilization? No, not at all.

00:57:10.856 --> 00:57:13.856
No? No, I don't want to put any year on that.

00:57:14.936 --> 00:57:19.276
That's really a longer project five year plans for the communists I know that,

00:57:19.276 --> 00:57:25.236
that's why I'm asking so Peter Wombart and for grant organizations so Peter

00:57:25.236 --> 00:57:28.656
Wombart, thank you very much for this conversation thanks Paul.

00:57:28.880 --> 00:57:34.800
Music.

00:57:34.736 --> 00:57:40.376
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00:57:40.376 --> 00:57:47.176
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00:57:48.216 --> 00:57:53.636
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00:57:53.636 --> 00:57:59.996
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00:58:00.196 --> 00:58:01.136
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00:58:01.040 --> 00:58:08.400
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